STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08118.1PFAM: 4Fe-4S binding domain; Conserved region in glutamate synthase; COGs: COG0069 Glutamate synthase domain 2; InterPro IPR001450:IPR002932; KEGG: mac:MA4218 glutamine-pyruvate aminotransferase; PFAM: Glutamate synthase, central-C; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Glutamine-pyruvate aminotransferase; Belongs to the glutamate synthase family. (503 aa)    
Predicted Functional Partners:
EJG07175.1
PFAM: Pyridine nucleotide-disulphide oxidoreductase; TIGRFAM: glutamate synthase (NADPH), homotetrameric; COGs: COG0493 NADPH-dependent glutamate synthase beta chain and related oxidoreductase; InterPro IPR013027:IPR006004; KEGG: mpi:Mpet_2094 glutamate synthase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SPTR: Glutamate synthase (NADPH), homotetrameric; TIGRFAM: Glutamate synthase (NADPH), homotetrameric.
 0.999
EJG08117.1
PFAM: Glutamine amidotransferases class-II; COGs: COG0067 Glutamate synthase domain 1; InterPro IPR000583; KEGG: mpl:Mpal_2710 glutamine amidotransferase class-II; PFAM: Glutamine amidotransferase, class-II; SPTR: Glutamine amidotransferase class-II.
 
 0.996
EJG08119.1
PFAM: GXGXG motif; COGs: COG0070 Glutamate synthase domain 3; InterPro IPR002489; KEGG: mem:Memar_0332 glutamate synthase alpha subunit; PFAM: Glutamate synthase, alpha subunit, C-terminal; SPTR: Glutamate synthase (NADPH) GltB3 subunit.
 
 
  0.987
EJG08120.1
PFAM: Coenzyme F420 hydrogenase/dehydrogenase, beta subunit N-term; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C terminus; COGs: COG1035 Coenzyme F420-reducing hydrogenase beta subunit; InterPro IPR001450:IPR007516:IPR007525; KEGG: mem:Memar_0331 coenzyme F420 hydrogenase/dehydrogenase beta subunit; PFAM: Coenzyme F420 hydrogenase/dehydrogenase beta subunit, C-terminal; Coenzyme F420 hydrogenase/dehydrogenase beta subunit, N-terminal; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; SPTR: Coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein.
 
    0.880
EJG08116.1
PFAM: Glutamine synthetase, catalytic domain; Glutamine synthetase, beta-Grasp domain; TIGRFAM: glutamine synthetase, type I; COGs: COG0174 Glutamine synthetase; InterPro IPR008147:IPR008146:IPR004809; KEGG: mem:Memar_0335 glutamine synthetase, type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp; SPTR: L-glutamine synthetase; TIGRFAM: Glutamine synthetase type I.
  
 
 0.855
EJG06962.1
PFAM: GXGXG motif; TIGRFAM: formylmethanofuran dehydrogenase subunit C; COGs: COG2218 Formylmethanofuran dehydrogenase subunit C; InterPro IPR002489:IPR017550; KEGG: mem:Memar_1189 glutamate synthase alpha subunit; PFAM: Glutamate synthase, alpha subunit, C-terminal; SPTR: Formylmethanofuran dehydrogenase, subunit C; TIGRFAM: Formylmethanofuran dehydrogenase subunit C.
 
 0.711
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine.
 
 
 0.672
carB
Carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain, ATP binding domain; MGS-like domain; Carbamoyl-phosphate synthetase large chain, oligomerisation domain; Carbamoyl-phosphate synthase L chain, N-terminal domain; TIGRFAM: carbamoyl-phosphate synthase, large subunit; COGs: COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ); InterProIPR005481:IPR005479:IPR005480:IPR011607:IPR 006275; KEGG: mem:Memar_0990 carbamoyl phosphate synthase large subunit; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate [...]
  
 
 0.664
EJG06471.1
PFAM: GXGXG motif; TIGRFAM: formylmethanofuran dehydrogenase subunit C; COGs: COG2218 Formylmethanofuran dehydrogenase subunit C; InterPro IPR017550:IPR002489; KEGG: mem:Memar_0618 formylmethanofuran dehydrogenase; PFAM: Glutamate synthase, alpha subunit, C-terminal; SPTR: Formylmethanofuran dehydrogenase, subunit C; TIGRFAM: Formylmethanofuran dehydrogenase subunit C.
  
 0.660
EJG07827.1
GMP synthase, large subunit; PFAM: GMP synthase C terminal domain; NAD synthase; TIGRFAM: GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit; COGs: COG0519 GMP synthase PP-ATPase domain/subunit; InterPro IPR001674:IPR018318; KEGG: mem:Memar_1900 GMP synthase subunit B; PFAM: GMP synthase, C-terminal; tRNA methyl transferase-like; SPTR: GMP synthase [glutamine-hydrolyzing] subunit B; TIGRFAM: GMP synthase, C-terminal.
  
 
 0.643
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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