STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08149.1PFAM: ArsR transcriptional regulator; COGs: COG4860 conserved hypothetical protein; InterPro IPR014517; KEGG: mbn:Mboo_2245 hypothetical protein; SPTR: Putative uncharacterized protein. (170 aa)    
Predicted Functional Partners:
EJG08151.1
PFAM: Helicase conserved C-terminal domain; DEAD/DEAH box helicase; COGs: COG1202 Superfamily II helicase; InterPro IPR014001:IPR001650:IPR011545; KEGG: mem:Memar_0420 DEAD/DEAH box helicase domain-containing protein; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SPTR: DEAD/DEAH box helicase domain protein.
       0.936
EJG08150.1
PFAM: MarR family; COGs: COG1497 transcriptional regulator protein; InterPro IPR001808:IPR000835; KEGG: mbn:Mboo_2244 helix-turn-helix, type 11 domain-containing protein; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, Crp; SPTR: Helix-turn-helix, type 11 domain protein.
 
     0.931
EJG07851.1
PFAM: Sugar-specific transcriptional regulator TrmB; COGs: COG4738 transcriptional regulator protein; InterPro IPR002831; KEGG: mpi:Mpet_0769 transcriptional regulator TrmB; PFAM: Transcriptional regulator TrmB; SPTR: Transcriptional regulator, TrmB.
  
     0.748
EJG06844.1
Like-Sm ribonucleoprotein core; PFAM: LSM domain; InterPro IPR006649:IPR001163; KEGG: mem:Memar_1564 like-Sm ribonucleoprotein, core; PFAM: Like-Sm ribonucleoprotein, core; SMART: Like-Sm ribonucleoprotein, core domain, eukaryotic/archaea-type; SPTR: Small nuclear ribonucleoprotein, LSM family.
  
     0.674
EJG07816.1
PFAM: PRC-barrel domain; InterPro IPR007903; KEGG: mpl:Mpal_0042 PRC-barrel domain protein; PFAM: PRC-barrel; SPTR: PRC-barrel domain protein.
  
     0.672
EJG07043.1
Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; COGs: COG4800 transcriptional regulator protein with an HTH domain; InterPro IPR001387; KEGG: mbn:Mboo_0738 helix-turn-helix domain-containing protein; PFAM: Helix-turn-helix type 3; SPTR: Helix-turn-helix domain protein.
 
     0.658
EJG07820.1
PFAM: Protein of unknown function (DUF1119); COGs: COG3389 conserved hypothetical protein; InterPro IPR006639:IPR010545; KEGG: mem:Memar_1924 hypothetical protein; PFAM: Protein of unknown function DUF1119, archaea; SMART: Peptidase A22, presenilin signal peptide; SPTR: Putative uncharacterized protein.
  
     0.623
EJG08148.1
(NiFe) hydrogenase maturation protein HypF; PFAM: HypF finger; yrdC domain; Acylphosphatase; TIGRFAM: [NiFe] hydrogenase maturation protein HypF; COGs: COG0068 Hydrogenase maturation factor; InterPro IPR001792:IPR011125:IPR006070:IPR004421; KEGG: mem:Memar_0417 (NiFe) hydrogenase maturation protein HypF; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type; SPTR: (NiFe) hydrogenase maturation protein HypF; TIGRFAM: Hydrogenase maturation factor, HypF-type.
       0.622
EJG07856.1
Exosortase EpsH-related protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); COGs: COG4083 membrane protein; InterPro IPR019127; KEGG: mbn:Mboo_0910 cytochrome oxidase, subunit I, putative; PFAM: Exosortase EpsH-related; SPTR: Cytochrome oxidase, subunit I, putative.
  
     0.610
EJG08249.1
PFAM: Protein of unknown function (DUF552); COGs: COG2450 conserved hypothetical protein; InterPro IPR012426; KEGG: mpl:Mpal_0398 protein of unknown function DUF1621; PFAM: Protein of unknown function DUF1621; SPTR: Putative uncharacterized protein.
  
     0.564
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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