STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08175.1PFAM: ACT domain; COGs: COG1707 ACT domain-containing protein; InterPro IPR002912; KEGG: mem:Memar_0435 amino acid-binding ACT domain-containing protein; PFAM: Amino acid-binding ACT; SPTR: Amino acid-binding ACT domain protein. (233 aa)    
Predicted Functional Partners:
EJG08177.1
COGs: COG1665 conserved hypothetical protein; KEGG: mem:Memar_0437 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.950
EJG08176.1
PFAM: yrdC domain; TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; COGs: COG0009 Putative translation factor (SUA5); InterPro IPR006070:IPR004388; KEGG: mpl:Mpal_0134 SUA5/YciO/YrdC/YwlC family protein; PFAM: Sua5/YciO/YrdC, N-terminal; SPTR: Sua5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC.
       0.943
htpX
Protease htpX; PFAM: Peptidase family M48; COGs: COG0501 Zn-dependent protease with chaperone function; HAMAP: protease htpX; InterPro IPR001915; KEGG: mpl:Mpal_0594 heat shock protein HtpX; PFAM: Peptidase M48, Ste24p; SPTR: Protease HtpX homolog; Belongs to the peptidase M48B family.
  
    0.872
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
 
    0.792
mtd
F420-dependent methylenetetrahydromethanopterin dehydrogenase; Catalyzes the reversible reduction of methenyl-H(4)MPT(+) to methylene-H(4)MPT.
  
     0.629
EJG06083.1
PFAM: Aminotransferase class-V; COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: mem:Memar_0056 aminotransferase, class V; PFAM: Aminotransferase, class V/Cysteine desulfurase; SPTR: Phosphoserine aminotransferase apoenzyme / L-aspartate aminotransferase apoenzyme.
   
    0.510
EJG06872.1
Conserved hypothetical protein CHP00300; PFAM: LOR/SDH bifunctional enzyme conserved region; TIGRFAM: TIGR00300 family protein; COGs: COG1915 conserved hypothetical protein; InterPro IPR007545:IPR005239; KEGG: mbn:Mboo_1408 LOR/SDH bifunctional protein; PFAM: LOR/SDH bifunctional enzyme conserved region; SPTR: LOR/SDH bifunctional enzyme conserved domain protein; TIGRFAM: Conserved hypothetical protein CHP00300.
  
     0.499
EJG06516.1
PFAM: tRNA synthetases class I (W and Y); COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305; KEGG: mem:Memar_0642 tryptophan--tRNA ligase; PFAM: Aminoacyl-tRNA synthetase, class Ib; SPTR: Tryptophanyl-tRNA synthetase.
  
    0.490
EJG07601.1
PFAM: AIR synthase related protein, N-terminal domain; AIR synthase related protein, C-terminal domain; COGs: COG1973 Hydrogenase maturation factor; InterPro IPR000728:IPR010918; KEGG: mem:Memar_1227 AIR synthase related protein; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; SPTR: AIR synthase related protein.
  
     0.477
EJG07879.1
PFAM: Membrane protein of unknown function DUF63; COGs: COG1967 membrane protein; InterPro IPR002749; KEGG: mpl:Mpal_0947 protein of unknown function DUF63; PFAM: Protein of unknown function DUF63; SPTR: Putative uncharacterized protein.
  
     0.469
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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