STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08249.1PFAM: Protein of unknown function (DUF552); COGs: COG2450 conserved hypothetical protein; InterPro IPR012426; KEGG: mpl:Mpal_0398 protein of unknown function DUF1621; PFAM: Protein of unknown function DUF1621; SPTR: Putative uncharacterized protein. (123 aa)    
Predicted Functional Partners:
EJG08250.1
PFAM: ZPR1 zinc-finger domain; TIGRFAM: ZPR1 zinc finger domain; ZPR1-related zinc finger protein; COGs: COG1779 C4-type Zn-finger protein; InterPro IPR004457:IPR004470; KEGG: mbn:Mboo_0090 ZPR1-related zinc finger protein; SPTR: ZPR1-related zinc finger protein; TIGRFAM: Zinc finger, ZPR1-type, subgroup; Zinc finger, ZPR1-type.
 
     0.953
EJG08248.1
PFAM: PUA domain; TIGRFAM: arCOG04150 universal archaeal PUA-domain protein; uncharacterized domain 2; COGs: COG2016 RNA-binding protein (contains PUA domain); InterPro IPR002478:IPR004521; KEGG: mhu:Mhun_3058 putative RNA-binding protein; PFAM: Pseudouridine synthase/archaeosine transglycosylase; SMART: Pseudouridine synthase/archaeosine transglycosylase; SPTR: RNA-binding protein, containing PUA domain; TIGRFAM: universal PUA-domain-containing protein; Uncharacterised domain 2.
       0.841
EJG07816.1
PFAM: PRC-barrel domain; InterPro IPR007903; KEGG: mpl:Mpal_0042 PRC-barrel domain protein; PFAM: PRC-barrel; SPTR: PRC-barrel domain protein.
  
    0.771
EJG08077.1
PFAM: PRC-barrel domain; COGs: COG1873 conserved hypothetical protein; InterPro IPR007903; KEGG: mem:Memar_0401 PRC-barrel domain-containing protein; PFAM: PRC-barrel; SPTR: PRC-barrel domain protein.
  
    0.765
EJG06094.1
TIGRFAM: signal peptidase I, archaeal type; InterPro IPR001733; KEGG: mem:Memar_0046 peptidase S26B, signal peptidase; SPTR: Peptidase S26B, signal peptidase; TIGRFAM: Peptidase S26B, eukaryotic signal peptidase.
  
     0.745
EJG07820.1
PFAM: Protein of unknown function (DUF1119); COGs: COG3389 conserved hypothetical protein; InterPro IPR006639:IPR010545; KEGG: mem:Memar_1924 hypothetical protein; PFAM: Protein of unknown function DUF1119, archaea; SMART: Peptidase A22, presenilin signal peptide; SPTR: Putative uncharacterized protein.
  
     0.743
EJG07856.1
Exosortase EpsH-related protein; PFAM: Transmembrane exosortase (Exosortase_EpsH); COGs: COG4083 membrane protein; InterPro IPR019127; KEGG: mbn:Mboo_0910 cytochrome oxidase, subunit I, putative; PFAM: Exosortase EpsH-related; SPTR: Cytochrome oxidase, subunit I, putative.
  
     0.729
EJG07607.1
Flagellin domain protein; PFAM: Protein of unknown function (DUF1628); TIGRFAM: archaeal flagellin N-terminal-like domain; InterPro IPR013373:IPR012859; KEGG: mem:Memar_1218 hypothetical protein; PFAM: Protein of unknown function DUF1628; SPTR: Putative uncharacterized protein; TIGRFAM: Archaeal flagellin, N-terminal related.
  
     0.713
EJG07760.1
PFAM: RNA polymerase Rpb4; COGs: COG1460 conserved hypothetical protein; InterPro IPR005574; KEGG: mpl:Mpal_0548 RNA polymerase Rpb4; PFAM: RNA polymerase II, Rpb4; SPTR: RNA polymerase Rpb4.
  
     0.713
EJG07156.1
KEGG: mem:Memar_0938 hypothetical protein; SPTR: Putative uncharacterized protein.
  
     0.711
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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