STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08269.1PFAM: Peptidase family M50; InterPro IPR008915; KEGG: mem:Memar_0156 peptidase M50; PFAM: Peptidase M50; SPTR: Peptidase M50. (200 aa)    
Predicted Functional Partners:
EJG07316.1
PFAM: Binding-protein-dependent transport system inner membrane component; TIGRFAM: phosphate ABC transporter, permease protein PstC; phosphate ABC transporter, permease protein PstA; COGs: COG0573 ABC-type phosphate transport system permease component; InterPro IPR011864:IPR005672:IPR000515; KEGG: mpi:Mpet_1485 phosphate ABC transporter inner membrane subunit PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; SPTR: Phosphate ABC transporter, inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; Phosphate transport system [...]
       0.730
EJG08270.1
PFAM: Chorismate mutase type II; TIGRFAM: chorismate mutase, archaeal type; InterPro IPR020822; KEGG: mpl:Mpal_1988 chorismate mutase; PFAM: Chorismate mutase, type II; SPTR: Chorismate mutase.
       0.602
EJG06516.1
PFAM: tRNA synthetases class I (W and Y); COGs: COG0180 Tryptophanyl-tRNA synthetase; InterPro IPR002305; KEGG: mem:Memar_0642 tryptophan--tRNA ligase; PFAM: Aminoacyl-tRNA synthetase, class Ib; SPTR: Tryptophanyl-tRNA synthetase.
 
     0.555
EJG06834.1
Hypothetical protein; COGs: COG0237 Dephospho-CoA kinase; KEGG: mem:Memar_1556 hypothetical protein; SPTR: UPF0200 protein Memar_1556.
 
     0.532
tpiA
Triosephosphate isomerase; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family.
 
     0.526
EJG07170.1
Transcriptional regulator, XRE family; PFAM: CBS domain; Helix-turn-helix; COGs: COG3620 transcriptional regulator protein; InterPro IPR001387:IPR000644; KEGG: mpl:Mpal_1730 transcriptional regulator, XRE family; PFAM: Cystathionine beta-synthase, core; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; Cystathionine beta-synthase, core; SPTR: Transcriptional regulator, XRE family.
 
     0.509
serS
Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
     0.505
EJG07824.1
Hypothetical protein; Broad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Belongs to the adenylate kinase family. AK6 subfamily.
 
     0.504
EJG06681.1
Methyltransferase type 11; PFAM: tRNA methyltransferase complex GCD14 subunit; COGs: COG2519 tRNA(1-methyladenosine) methyltransferase and related methyltransferase; InterPro IPR013216; KEGG: mem:Memar_1687 protein-L-isoaspartate methyltransferase-like protein; PFAM: Methyltransferase type 11; SPTR: Protein-L-isoaspartate methyltransferase-like protein.
 
     0.499
argS
Arginyl-tRNA synthetase; PFAM: DALR anticodon binding domain; Arginyl tRNA synthetase N terminal domain; tRNA synthetases class I (R); TIGRFAM: arginyl-tRNA synthetase; COGs: COG0018 Arginyl-tRNA synthetase; HAMAP: Arginyl-tRNA synthetase, class Ic; InterPro IPR001278:IPR005148:IPR015945:IPR008909; KEGG: mem:Memar_2213 arginyl-tRNA synthetase; PFAM: DALR anticodon binding; Arginyl-tRNA synthetase, class Ic, core; Arginyl tRNA synthetase, class Ic, N-terminal; SPTR: Arginyl-tRNA synthetase; TIGRFAM: Arginyl-tRNA synthetase, class Ic; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
     0.496
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.