STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EJG08322.1Transcriptional regulator, XRE family; PFAM: Helix-turn-helix; COGs: COG1476 transcriptional regulator protein; InterPro IPR001387; KEGG: mem:Memar_2218 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; SPTR: Transcriptional regulator, XRE family. (69 aa)    
Predicted Functional Partners:
EJG08316.1
KEGG: mem:Memar_2217 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.909
EJG08321.1
KEGG: mpl:Mpal_2703 cytochrome c-type biogenesis protein CcmB; SPTR: Putative ABC transporter, permease protein.
     
 0.787
EJG08315.1
KEGG: mem:Memar_2217 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.783
EJG08317.1
KEGG: mac:MA2277 hypothetical protein; SPTR: Predicted protein.
       0.783
EJG08318.1
Hypothetical protein.
       0.783
EJG08320.1
PFAM: ABC transporter; COGs: COG1131 ABC-type multidrug transport system ATPase component; InterPro IPR003593:IPR003439; KEGG: mem:Memar_0809 ABC transporter-related protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; SPTR: ABC transporter-related protein.
     
 0.777
EJG08319.1
Hypothetical protein.
       0.762
EJG07839.1
Molybdate ABC transporter, ATPase subunit; PFAM: ABC transporter; TOBE domain; TIGRFAM: molybdenum-pterin binding domain; molybdenum ABC transporter, ATP-binding protein; COGs: COG3842 ABC-type spermidine/putrescine transport systems ATPase components; InterPro IPR003593:IPR011868:IPR003439:IPR005116; KEGG: mem:Memar_1882 ABC transporter-related protein; PFAM: ABC transporter-like; Transport-associated OB, type 1; SMART: ATPase, AAA+ type, core; SPTR: Tungstate/molybdate transport system ATP-binding protein; TIGRFAM: Molybdate ABC transporter, ATP-binding protein.
       0.758
EJG07104.1
PFAM: Glycosyl transferase family 2; COGs: COG0746 Molybdopterin-guanine dinucleotide biosynthesis protein A; KEGG: mem:Memar_0792 molybdopterin-guanine dinucleotide biosynthesis protein A; SPTR: Molybdenum cofactor guanylyltransferase.
    
  0.535
EJG06116.1
PFAM: Probable molybdopterin binding domain; TIGRFAM: molybdenum cofactor synthesis domain; COGs: COG0521 Molybdopterin biosynthesis protein; InterPro IPR001453:IPR020817; KEGG: mpl:Mpal_2796 molybdenum cofactor synthesis domain protein; PFAM: Molybdopterin binding; SPTR: Molybdenum cofactor synthesis domain protein; TIGRFAM: Molybdenum cofactor synthesis.
    
  0.522
Your Current Organism:
Methanofollis liminatans
NCBI taxonomy Id: 28892
Other names: M. liminatans DSM 4140, Methanofollis liminatans DSM 4140, Methanofollis liminatans GKZPZ, Methanofollis liminatans str. DSM 4140, Methanofollis liminatans strain DSM 4140, Methanogenium liminatans (DSM 4140), Methanogenium liminatans DSM 4140
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