STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
selDSelenophosphate synthetase; Synthesizes selenophosphate from selenide and ATP. (340 aa)    
Predicted Functional Partners:
selA
Selenocysteine synthase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
 
  
 0.985
yedF
Selenium metabolism protein; Pfam match to PF01206.15 TusA; Belongs to the sulfur carrier protein TusA family.
 
   
 0.951
trxB
Thioredoxin reductase; Pfam match to PF07992.12 Pyr_redox_2.
     
 0.907
ARE80896.1
NADPH oxidoreductase, putative flavodoxin quinone reductase FqrB; Pfam match to PF13738.4 Pyr_redox_3.
     
 0.907
iscS
Cysteine desulfurase/aminotransferase (IscS/NifS); Pfam match to PF00266.17 Aminotran_5.
    
 0.884
mnmH
tRNA 2-selenouridine synthase; Pfam match to PF00581.18 Rhodanese; Belongs to the SelU family.
 
   
 0.855
selB
Selenocysteine-specific elongation factor; Pfam matches to PF00009.25 GTP_EFTU, and to PF09107.9 SelB-wing_3.
 
   
 0.848
ARE79775.1
Putative transcriptional regulator, ModE family.
 
   
 0.827
fdhD
Formate dehydrogenase accessory protein; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
     
 0.818
putA
Proline dehydrogenase / 1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
     
 0.730
Your Current Organism:
Campylobacter helveticus
NCBI taxonomy Id: 28898
Other names: ATCC 51209, C. helveticus, CCUG 30682, CIP 104877, LMG 12638, LMG 19528, LMG:12638, LMG:19528, NCTC 12470
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