STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARE79798.1HD family hydrolase, possible ComGF family competence protein; Pfam match to PF13023.4 HD_3. (408 aa)    
Predicted Functional Partners:
ctsF
Transformation system, type II secretion system membrane protein CtsF; Pfam matches to PF00482.21 T2SSF, and to PF00482.21 T2SSF.
  
  
 0.832
ctsE
Transformation system, type II secretion system ATPase CtsE; Pfam matches to PF00437.18 T2SSE, and to PF05157.13 T2SSE_N.
  
  
 0.810
ARE80634.1
Conjugative transfer system, pilin assembly protein TrbC; Pfam match to PF09673.8 TrbC_Ftype.
  
  
 0.583
ARE80656.1
Conjugative transfer mating pair stabilization protein TraN; Pfam matches to PF06986.9 TraN, and to PF00059.19 Lectin_C.
  
  
 0.583
ctsG
Transformation system, putative pseudopilin protein CtsG.
  
  
 0.583
ARE80987.1
Putative type II secretion system protein.
  
  
 0.583
ARE81340.1
Hypothetical protein.
  
  
 0.583
ARE80951.1
Lipoprotein, NlpC/P60 family (SH3 domains); Pfam matches to PF12913.5 SH3_6, and to PF12912.5 N_NLPC_P60, and to PF00877.17 NLPC_P60, and to PF12914.5 SH3_7.
  
     0.576
queC
7-cyano-7-deazaguanine synthase; Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)). Belongs to the QueC family.
       0.562
ARE80529.1
Peptidase A24 N-terminal domain protein, putative prepilin signal peptidase; Pfam matches to PF06750.11 DiS_P_DiS, and to PF01478.16 Peptidase_A24.
  
  
 0.502
Your Current Organism:
Campylobacter helveticus
NCBI taxonomy Id: 28898
Other names: ATCC 51209, C. helveticus, CCUG 30682, CIP 104877, LMG 12638, LMG 19528, LMG:12638, LMG:19528, NCTC 12470
Server load: low (8%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.