STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
waaCHeptosyltransferase I; Pfam match to PF01075.15 Glyco_transf_9. (340 aa)    
Predicted Functional Partners:
kdtA
3-deoxy-D-manno-octulosonic-acid transferase (KDO transferase); Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
 
  
 0.986
waaF
Heptosyltransferase II; Pfam match to PF01075.15 Glyco_transf_9.
 
 
0.985
waaE
D,D-heptose 1-phosphate adenosyltransferase / 7-phosphate kinase; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
 
  
 0.952
ARE80147.1
Glycosyltransferase, family 8; Pfam match to PF01501.18 Glyco_transf_8.
  
 
 0.910
gmhA
Phosphoheptose isomerase; Catalyzes the isomerization of sedoheptulose 7-phosphate in D-glycero-D-manno-heptose 7-phosphate.
 
   
 0.901
waaM
Lipid A biosynthesis lauroyl acyltransferase; Pfam match to PF03279.11 Lip_A_acyltrans.
 
   
 0.863
ARE80169.1
Glycosyltransferase, family 2; Pfam matches to PF00535.24 Glycos_transf_2, and to PF00535.24 Glycos_transf_2, and to PF05679.14 CHGN.
 
  
 0.856
gmhB
D,D-heptose 1,7-bisphosphate phosphatase; Pfam match to PF13242.4 Hydrolase_like.
 
   
 0.849
ARE80168.1
Glycosyltransferase, family 1; Pfam match to PF00534.18 Glycos_transf_1.
  
  
 0.790
waaD
ADP-L-glycero-D-mannoheptose-6-epimerase; Pfam match to PF01370.19 Epimerase.
 
  
 0.788
Your Current Organism:
Campylobacter helveticus
NCBI taxonomy Id: 28898
Other names: ATCC 51209, C. helveticus, CCUG 30682, CIP 104877, LMG 12638, LMG 19528, LMG:12638, LMG:19528, NCTC 12470
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