STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tssEType VI secretion system, baseplate protein; Pfam match to PF04965.12 GPW_gp25. (131 aa)    
Predicted Functional Partners:
tssB
Type VI secretion system, tubular sheath protein; Pfam match to PF05591.10 T6SS_VipA.
  
  
 0.940
tssG
Type VI secretion system protein; Pfam match to PF06996.9 T6SS_TssG.
  
  
 0.916
tssC
Type VI secretion system, tubular sheath protein; Pfam match to PF05943.10 VipB.
  
  
 0.909
tssF
Type VI secretion system protein; Pfam match to PF05947.10 T6SS_TssF.
  
  
 0.903
tssA
Type VI secretion system protein; Pfam match to PF16989.3 T6SS_VasJ.
  
  
 0.762
tssL
Type VI secretion system, membrane platform protein; Pfam match to PF09850.7 DotU.
  
  
 0.702
tssK
Type VI secretion system, membrane platform protein; Pfam match to PF05936.10 T6SS_VasE.
  
  
 0.694
tssJ
Type VI secretion system, membrane platform protein; Pfam match to PF12790.5 T6SS-SciN.
  
  
 0.677
tssI
Type VI secretion system, secreted protein; Pfam match to PF05954.9 Phage_GPD.
  
  
 0.531
Your Current Organism:
Campylobacter helveticus
NCBI taxonomy Id: 28898
Other names: ATCC 51209, C. helveticus, CCUG 30682, CIP 104877, LMG 12638, LMG 19528, LMG:12638, LMG:19528, NCTC 12470
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.