STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARE80632.1Conjugative transfer system protein TraW. (247 aa)    
Predicted Functional Partners:
ARE80633.1
Conjugative transfer system protein TraU; Pfam match to PF06834.9 TraU.
 
   
 0.953
ARE80659.1
Conjugative transfer pilus assembly protein TraH; Pfam match to PF06122.9 TraH.
 
   
 0.815
ARE80661.1
Conjugative transfer system ATP-binding protein TraC; Pfam matches to PF11130.6 TraC_F_IV, and to PF12846.5 AAA_10.
 
   
 0.806
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.804
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.803
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.803
ARE80666.1
Conjugative transfer system protein TraB; Pfam match to PF03743.12 TrbI.
 
     0.802
ARE80655.1
Conjugative transfer system protein TraG; Pfam match to PF07916.9 TraG_N.
 
   
 0.801
ARE80660.1
Conjugative transfer signal peptidase; Pfam match to PF10502.7 Peptidase_S26.
 
     0.800
ARE80668.1
Conjugative transfer system protein TraE; Pfam match to PF05309.9 TraE.
 
     0.800
Your Current Organism:
Campylobacter helveticus
NCBI taxonomy Id: 28898
Other names: ATCC 51209, C. helveticus, CCUG 30682, CIP 104877, LMG 12638, LMG 19528, LMG:12638, LMG:19528, NCTC 12470
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.