STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dutdUTPase, dimeric; Pfam match to PF08761.9 dUTPase_2. (226 aa)    
Predicted Functional Partners:
ARE80923.1
Putative membrane protein (EI24 domain); Pfam match to PF07264.9 EI24.
       0.800
petC
Ubiquinol cytochrome c oxidoreductase PetABC, membrane-bound cytochrome c subunit; Pfam match to PF00034.19 Cytochrom_C.
  
     0.605
ARE81181.1
Hypothetical protein (DUF234 domain); Pfam match to PF03008.12 DUF234.
  
     0.555
ARE80487.1
DHH-type phosphohydrolase.
  
     0.548
ARE80008.1
RND superfamily exporter; Pfam matches to PF03176.13 MMPL, and to PF03176.13 MMPL.
  
     0.536
ctsW
Transformation system, predicted amidophosphoribosyltransferase CtsW.
  
     0.533
ndk
Nucleoside diphosphate kinase; Major role in the synthesis of nucleoside triphosphates other than ATP. The ATP gamma phosphate is transferred to the NDP beta phosphate via a ping-pong mechanism, using a phosphorylated active-site intermediate; Belongs to the NDK family.
     
  0.499
thyX
Thymidylate synthase, flavin-dependent; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
     
  0.499
ARE80935.1
Hypothetical protein (putative TrkA domain); Pfam match to PF02080.19 TrkA_C.
  
     0.488
ARE80921.1
SAM-dependent methyltransferase; Pfam match to PF08241.10 Methyltransf_11.
       0.485
Your Current Organism:
Campylobacter helveticus
NCBI taxonomy Id: 28898
Other names: ATCC 51209, C. helveticus, CCUG 30682, CIP 104877, LMG 12638, LMG 19528, LMG:12638, LMG:19528, NCTC 12470
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