STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ARE81063.1Hypothetical protein. (267 aa)    
Predicted Functional Partners:
ARE81065.1
rRNA methyltransferase, TrmH family, group 3; Pfam matches to PF00588.17 SpoU_methylase, and to PF08032.10 SpoU_sub_bind; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
     
 0.813
ARE81060.1
Hypothetical protein (UPF0102 domain); Pfam match to PF02021.15 UPF0102; Belongs to the UPF0102 family.
       0.800
hom
Pfam matches to PF00742.17 Homoserine_dh, and to PF03447.14 NAD_binding_3, and to PF01842.23 ACT.
       0.800
ARE81062.1
Aspartate aminotransferase; Pfam match to PF00155.19 Aminotran_1_2.
       0.800
ARE81064.1
Hypothetical protein.
       0.800
rsmI
16S rRNA (cytidine(1402)-2'-O)-methyltransferase; Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.
       0.800
rpmE
50S ribosomal protein L31; Binds the 23S rRNA.
       0.800
trx
Thioredoxin; Pfam match to PF00085.18 Thioredoxin; Belongs to the thioredoxin family.
       0.655
rsmE
16S rRNA m3U1498 methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.
       0.581
ubiA
4-hydroxybenzoate octaprenyltransferase; Pfam match to PF01040.16 UbiA; Belongs to the UbiA prenyltransferase family.
       0.581
Your Current Organism:
Campylobacter helveticus
NCBI taxonomy Id: 28898
Other names: ATCC 51209, C. helveticus, CCUG 30682, CIP 104877, LMG 12638, LMG 19528, LMG:12638, LMG:19528, NCTC 12470
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.