Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ARE80765.1 | folE | CHELV3228_1181 | CHELV3228_0298 | Hypothetical protein (NIF3 domain); Pfam match to PF01784.16 NIF3. | Pfam match to PF01227.20 GTP_cyclohydroI. | 0.911 |
ARE80765.1 | moaA | CHELV3228_1181 | CHELV3228_1504 | Hypothetical protein (NIF3 domain); Pfam match to PF01784.16 NIF3. | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.900 |
ARE80765.1 | queD | CHELV3228_1181 | CHELV3228_1502 | Hypothetical protein (NIF3 domain); Pfam match to PF01784.16 NIF3. | 6-carboxy-5,6,7,8-tetrahydropterin synthase; Pfam match to PF01242.17 PTPS. | 0.901 |
ARE81069.1 | ARE81070.1 | CHELV3228_1500 | CHELV3228_1501 | Putative membrane protein. | Hypothetical protein. | 0.800 |
ARE81069.1 | ARE81074.1 | CHELV3228_1500 | CHELV3228_1505 | Putative membrane protein. | Hypothetical protein. | 0.800 |
ARE81069.1 | moaA | CHELV3228_1500 | CHELV3228_1504 | Putative membrane protein. | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.800 |
ARE81069.1 | queD | CHELV3228_1500 | CHELV3228_1502 | Putative membrane protein. | 6-carboxy-5,6,7,8-tetrahydropterin synthase; Pfam match to PF01242.17 PTPS. | 0.800 |
ARE81069.1 | queE | CHELV3228_1500 | CHELV3228_1503 | Putative membrane protein. | 7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.800 |
ARE81069.1 | rsmE | CHELV3228_1500 | CHELV3228_1499 | Putative membrane protein. | 16S rRNA m3U1498 methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.800 |
ARE81070.1 | ARE81069.1 | CHELV3228_1501 | CHELV3228_1500 | Hypothetical protein. | Putative membrane protein. | 0.800 |
ARE81070.1 | ARE81074.1 | CHELV3228_1501 | CHELV3228_1505 | Hypothetical protein. | Hypothetical protein. | 0.784 |
ARE81070.1 | moaA | CHELV3228_1501 | CHELV3228_1504 | Hypothetical protein. | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.802 |
ARE81070.1 | queD | CHELV3228_1501 | CHELV3228_1502 | Hypothetical protein. | 6-carboxy-5,6,7,8-tetrahydropterin synthase; Pfam match to PF01242.17 PTPS. | 0.800 |
ARE81070.1 | queE | CHELV3228_1501 | CHELV3228_1503 | Hypothetical protein. | 7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.819 |
ARE81070.1 | rsmE | CHELV3228_1501 | CHELV3228_1499 | Hypothetical protein. | 16S rRNA m3U1498 methyltransferase; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.800 |
ARE81074.1 | ARE81069.1 | CHELV3228_1505 | CHELV3228_1500 | Hypothetical protein. | Putative membrane protein. | 0.800 |
ARE81074.1 | ARE81070.1 | CHELV3228_1505 | CHELV3228_1501 | Hypothetical protein. | Hypothetical protein. | 0.784 |
ARE81074.1 | moaA | CHELV3228_1505 | CHELV3228_1504 | Hypothetical protein. | Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate. | 0.800 |
ARE81074.1 | queD | CHELV3228_1505 | CHELV3228_1502 | Hypothetical protein. | 6-carboxy-5,6,7,8-tetrahydropterin synthase; Pfam match to PF01242.17 PTPS. | 0.800 |
ARE81074.1 | queE | CHELV3228_1505 | CHELV3228_1503 | Hypothetical protein. | 7-carboxy-7-deazaguanine synthase; Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7- deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds. | 0.800 |
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