STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsbIDsbB-related disulfide oxidoreductase; Pfam match to PF02600.14 DsbB. (505 aa)    
Predicted Functional Partners:
dba
DsbI-accessory protein Dba.
  
    0.804
ARE81101.1
Glycerophosphodiester phosphodiesterase; Pfam match to PF03009.15 GDPD.
       0.671
rarA
Recombination factor protein RarA; Pfam matches to PF12002.6 MgsA_C, and to PF05496.10 RuvB_N, and to PF16193.3 AAA_assoc_2.
       0.532
nikX
Nickel ABC transporter, permease protein; Pfam match to PF00528.20 BPD_transp_1.
  
    0.514
nikV
Nickel ABC transporter, ATP-binding protein; Pfam match to PF00005.25 ABC_tran.
       0.511
nikW
Nickel ABC transporter, ATP-binding protein; Pfam match to PF00005.25 ABC_tran.
       0.511
nikY
Nickel ABC transporter, permease protein; Pfam match to PF00528.20 BPD_transp_1.
       0.511
nikZ
Nickel ABC transporter, periplasmic nickel-binding protein; Pfam match to PF00496.20 SBP_bac_5.
       0.511
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
   
 
 0.478
Your Current Organism:
Campylobacter helveticus
NCBI taxonomy Id: 28898
Other names: ATCC 51209, C. helveticus, CCUG 30682, CIP 104877, LMG 12638, LMG 19528, LMG:12638, LMG:19528, NCTC 12470
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