STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE83525.1Hypothetical protein. (285 aa)    
Predicted Functional Partners:
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
 
     0.905
SHE83556.1
Hypothetical protein.
       0.848
SHE83459.1
Hypothetical protein.
       0.847
SHE83585.1
L-ascorbate metabolism protein UlaG, beta-lactamase superfamily.
       0.627
SHG21545.1
Hypothetical protein.
  
     0.563
SHE83427.1
Protein of unknown function.
       0.546
SHG60256.1
Tetratricopeptide repeat-containing protein.
  
     0.537
SHE67311.1
3-methyladenine DNA glycosylase AlkD.
  
     0.522
SHF11154.1
Outer membrane receptor for ferrienterochelin and colicins.
  
     0.508
SHF66686.1
Hypothetical protein.
  
     0.490
Your Current Organism:
Pedobacter caeni
NCBI taxonomy Id: 288992
Other names: DSM 16990, LMG 22862, LMG:22862, P. caeni, Pedobacter caeni Vanparys et al. 2005, Pedobacter sp. R-21937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.