STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE50579.1Transcriptional regulator, AraC family. (283 aa)    
Predicted Functional Partners:
SHF98716.1
AraC-type DNA-binding protein.
  
     0.760
SHF44318.1
AraC-type DNA-binding protein.
 
   0.759
SHF14263.1
AraC-type DNA-binding protein.
  
     0.752
SHE39851.1
AraC-type DNA-binding protein.
 
   0.745
SHE55158.1
AraC-type DNA-binding protein.
  
     0.741
SHG40567.1
Transcriptional regulator, AraC family.
 
   0.724
SHF37179.1
AraC-type DNA-binding protein.
  
     0.715
SHE53161.1
AraC-type DNA-binding protein.
  
     0.704
SHG01465.1
Helix-turn-helix domain-containing protein.
  
     0.692
SHE58310.1
AraC-type DNA-binding protein.
  
     0.686
Your Current Organism:
Pedobacter caeni
NCBI taxonomy Id: 288992
Other names: DSM 16990, LMG 22862, LMG:22862, P. caeni, Pedobacter caeni Vanparys et al. 2005, Pedobacter sp. R-21937
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.