STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE59749.1Predicted arabinose efflux permease, MFS family. (365 aa)    
Predicted Functional Partners:
SHE59788.1
solute:Na+ symporter, SSS family; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.572
SHE59716.1
Hypothetical protein.
       0.412
SHF66141.1
Quinol:cytochrome c oxidoreductase iron-sulfur protein precursor.
     
 0.400
Your Current Organism:
Pedobacter caeni
NCBI taxonomy Id: 288992
Other names: DSM 16990, LMG 22862, LMG:22862, P. caeni, Pedobacter caeni Vanparys et al. 2005, Pedobacter sp. R-21937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.