STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF45483.1Helix-turn-helix domain-containing protein. (167 aa)    
Predicted Functional Partners:
SHE68297.1
Helix-turn-helix domain-containing protein.
  
     0.774
SHG42257.1
Helix-turn-helix.
 
   
 0.774
SHF18402.1
Helix-turn-helix domain-containing protein.
  
     0.771
SHG53903.1
Nicotinamide-nucleotide amidase; Belongs to the CinA family.
    
 0.568
SHG14302.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.523
SHF79571.1
Uncharacterized damage-inducible protein DinB (forms a four-helix bundle).
  
     0.510
SHF33746.1
Hypothetical protein.
  
     0.482
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.471
SHF45460.1
Hypothetical protein.
       0.443
SHF78789.1
Hypothetical protein.
  
     0.436
Your Current Organism:
Pedobacter caeni
NCBI taxonomy Id: 288992
Other names: DSM 16990, LMG 22862, LMG:22862, P. caeni, Pedobacter caeni Vanparys et al. 2005, Pedobacter sp. R-21937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.