STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF19727.1NlpC/P60 family protein. (179 aa)    
Predicted Functional Partners:
SHE87824.1
Probable lipoprotein NlpC.
  
     0.774
SHF19759.1
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.717
SHF19787.1
Phenylalanine-4-hydroxylase.
       0.717
SHF21990.1
SH3 domain-containing protein.
  
     0.673
SHF07966.1
Cell division transport system permease protein; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
 
 
 0.656
SHG79015.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
  
 0.648
SHG79048.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
  
 0.648
SHG53962.1
N-acetylmuramoyl-L-alanine amidase.
 
 
 0.573
SHG74394.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.555
SHE86576.1
Penicillin-binding protein 1A.
  
  
  0.547
Your Current Organism:
Pedobacter caeni
NCBI taxonomy Id: 288992
Other names: DSM 16990, LMG 22862, LMG:22862, P. caeni, Pedobacter caeni Vanparys et al. 2005, Pedobacter sp. R-21937
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