STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF21990.1SH3 domain-containing protein. (260 aa)    
Predicted Functional Partners:
SHE87824.1
Probable lipoprotein NlpC.
  
     0.703
SHF61860.1
Lipoprotein Spr.
  
     0.700
SHF19727.1
NlpC/P60 family protein.
  
     0.673
SHG79015.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
 
 
 0.660
SHG79048.1
Flagellum-specific peptidoglycan hydrolase FlgJ.
  
 
 0.612
SHF21876.1
Nucleotide-binding universal stress protein, UspA family.
       0.547
SHF70603.1
CubicO group peptidase, beta-lactamase class C family.
  
 
 0.536
SHG74394.1
N-acetylmuramoyl-L-alanine amidase.
  
 
 0.524
SHF21960.1
Hypothetical protein.
       0.517
SHG00008.1
UDP-N-acetylmuramate: L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase.
 
 
  0.492
Your Current Organism:
Pedobacter caeni
NCBI taxonomy Id: 288992
Other names: DSM 16990, LMG 22862, LMG:22862, P. caeni, Pedobacter caeni Vanparys et al. 2005, Pedobacter sp. R-21937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.