STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF31212.1Putative ABC transport system permease protein. (792 aa)    
Predicted Functional Partners:
SHF31269.1
ABC-type lipoprotein export system, ATPase component.
 
 0.952
SHF31108.1
Putative ABC transport system ATP-binding protein.
 
 0.950
SHF31078.1
HlyD family secretion protein.
 
  0.927
SHG61263.1
Putative ABC transport system ATP-binding protein.
 
 0.895
SHG61302.1
HlyD family secretion protein.
 
  0.884
SHF31027.1
PAS domain-containing protein.
 
     0.819
SHF31244.1
Duplicated orphan permease.
 
   
0.794
SHF31183.1
ABC-type antimicrobial peptide transport system, permease component.
 
    
0.771
SHG61373.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
  
     0.766
SHG79907.1
Putative ABC transport system ATP-binding protein.
  
 0.764
Your Current Organism:
Pedobacter caeni
NCBI taxonomy Id: 288992
Other names: DSM 16990, LMG 22862, LMG:22862, P. caeni, Pedobacter caeni Vanparys et al. 2005, Pedobacter sp. R-21937
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