STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF62357.1ABC-2 type transport system ATP-binding protein. (232 aa)    
Predicted Functional Partners:
SHF62390.1
Hypothetical protein.
 
     0.964
SHF62418.1
Putative ATPase.
       0.848
SHF62454.1
Superfamily II DNA and RNA helicase; Belongs to the DEAD box helicase family.
   
   0.757
SHF62332.1
Outer membrane protein OmpA.
       0.656
SHF84806.1
Parallel beta-helix repeat-containing protein.
  
 0.551
SHF23799.1
ABC-2 type transport system permease protein.
  
 0.550
SHF23944.1
ABC-2 type transport system permease protein.
  
 0.550
SHF65266.1
ABC-2 type transport system permease protein.
  
 0.550
SHF65356.1
ABC-2 type transport system permease protein.
  
 0.550
SHF16708.1
ABC-type transport system involved in multi-copper enzyme maturation, permease component.
  
 0.531
Your Current Organism:
Pedobacter caeni
NCBI taxonomy Id: 288992
Other names: DSM 16990, LMG 22862, LMG:22862, P. caeni, Pedobacter caeni Vanparys et al. 2005, Pedobacter sp. R-21937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.