Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHF99784.1 | SHG03214.1 | SAMN04488522_10497 | SAMN04488522_104224 | De-hypoxanthine futalosine cyclase. | Protein of unknown function. | 0.528 |
SHF99784.1 | SHG03242.1 | SAMN04488522_10497 | SAMN04488522_104225 | De-hypoxanthine futalosine cyclase. | Protein of unknown function. | 0.504 |
SHF99784.1 | SHG03270.1 | SAMN04488522_10497 | SAMN04488522_104226 | De-hypoxanthine futalosine cyclase. | Protein of unknown function. | 0.518 |
SHF99784.1 | SHG38252.1 | SAMN04488522_10497 | SAMN04488522_105291 | De-hypoxanthine futalosine cyclase. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.411 |
SHF99784.1 | SHG38345.1 | SAMN04488522_10497 | SAMN04488522_105294 | De-hypoxanthine futalosine cyclase. | Sulfur carrier protein. | 0.774 |
SHF99784.1 | thiC | SAMN04488522_10497 | SAMN04488522_105293 | De-hypoxanthine futalosine cyclase. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.750 |
SHF99784.1 | thiG | SAMN04488522_10497 | SAMN04488522_105289 | De-hypoxanthine futalosine cyclase. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.913 |
SHG03194.1 | SHG03214.1 | SAMN04488522_104223 | SAMN04488522_104224 | LemA protein. | Protein of unknown function. | 0.856 |
SHG03194.1 | SHG03242.1 | SAMN04488522_104223 | SAMN04488522_104225 | LemA protein. | Protein of unknown function. | 0.732 |
SHG03194.1 | SHG03270.1 | SAMN04488522_104223 | SAMN04488522_104226 | LemA protein. | Protein of unknown function. | 0.733 |
SHG03214.1 | SHF99784.1 | SAMN04488522_104224 | SAMN04488522_10497 | Protein of unknown function. | De-hypoxanthine futalosine cyclase. | 0.528 |
SHG03214.1 | SHG03194.1 | SAMN04488522_104224 | SAMN04488522_104223 | Protein of unknown function. | LemA protein. | 0.856 |
SHG03214.1 | SHG03242.1 | SAMN04488522_104224 | SAMN04488522_104225 | Protein of unknown function. | Protein of unknown function. | 0.599 |
SHG03214.1 | SHG03270.1 | SAMN04488522_104224 | SAMN04488522_104226 | Protein of unknown function. | Protein of unknown function. | 0.589 |
SHG03214.1 | SHG38252.1 | SAMN04488522_104224 | SAMN04488522_105291 | Protein of unknown function. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.730 |
SHG03214.1 | SHG38345.1 | SAMN04488522_104224 | SAMN04488522_105294 | Protein of unknown function. | Sulfur carrier protein. | 0.741 |
SHG03214.1 | mqnE | SAMN04488522_104224 | SAMN04488522_1011480 | Protein of unknown function. | Aminodeoxyfutalosine synthase; Radical SAM enzyme that catalyzes the addition of the adenosyl radical to the double bond of 3-[(1-carboxyvinyl)oxy]benzoate, leading to aminodeoxyfutalosine (AFL), a key intermediate in the formation of menaquinone (MK, vitamin K2) from chorismate. | 0.535 |
SHG03214.1 | nnrD | SAMN04488522_104224 | SAMN04488522_103415 | Protein of unknown function. | yjeF C-terminal region, hydroxyethylthiazole kinase-related; Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S-and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. | 0.496 |
SHG03214.1 | thiC | SAMN04488522_104224 | SAMN04488522_105293 | Protein of unknown function. | Hydroxymethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.792 |
SHG03214.1 | thiG | SAMN04488522_104224 | SAMN04488522_105289 | Protein of unknown function. | Thiazole-phosphate synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.820 |
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