STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG03725.1Two component transcriptional regulator, LytTR family. (252 aa)    
Predicted Functional Partners:
SHG03695.1
Histidine kinase.
 
  0.959
SHE76780.1
GHKL domain-containing protein.
  
  0.893
SHE78337.1
Histidine kinase.
  
  0.846
SHE70208.1
Histidine kinase.
 
  0.828
SHG34245.1
Histidine kinase.
 
  0.828
SHE49087.1
Histidine kinase.
 
  0.827
SHF99898.1
Two component regulator propeller.
  
  0.826
SHE50377.1
Histidine kinase.
 
  0.823
SHF32511.1
Histidine kinase.
 
  0.821
SHG31170.1
Cache domain-containing protein.
 
  0.819
Your Current Organism:
Pedobacter caeni
NCBI taxonomy Id: 288992
Other names: DSM 16990, LMG 22862, LMG:22862, P. caeni, Pedobacter caeni Vanparys et al. 2005, Pedobacter sp. R-21937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.