STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHH07302.1Hypothetical protein. (464 aa)    
Predicted Functional Partners:
SHH07331.1
Uncharacterized conserved protein, implicated in type VI secretion and phage assembly.
      0.778
SHH07273.1
Hypothetical protein.
       0.693
SHH07240.1
Hypothetical protein.
       0.615
SHH07208.1
Protein of unknown function.
     
 0.569
SHH07174.1
Hypothetical protein.
      
0.557
SHH07377.1
Hypothetical protein.
       0.553
SHH07146.1
Hypothetical protein.
       0.533
SHF29952.1
Type VI secretion, VasB, ImpH, VC_A0111.
  
 
 0.486
SHF30233.1
Hypothetical protein.
  
  
 0.468
Your Current Organism:
Pedobacter caeni
NCBI taxonomy Id: 288992
Other names: DSM 16990, LMG 22862, LMG:22862, P. caeni, Pedobacter caeni Vanparys et al. 2005, Pedobacter sp. R-21937
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.