STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFO95818.1Benzoate membrane transport protein. (416 aa)    
Predicted Functional Partners:
SFO95866.1
Muconolactone delta-isomerase.
 
   
 0.661
SFO95841.1
Catechol 1,2-dioxygenase.
 
   
 0.632
SFO95975.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
 
   
 0.577
SFO95893.1
Muconate cycloisomerase; Belongs to the mandelate racemase/muconate lactonizing enzyme family.
 
   
 0.573
SFO96001.1
Benzoate/toluate 1,2-dioxygenase beta subunit.
 
   
 0.571
SFO95946.1
1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
   
 0.537
SFO95798.1
Outer membrane porin, OprD family.
     
 0.526
SFO96021.1
Benzoate 1,2-dioxygenase, alpha subunit.
 
   
 0.508
SFO95919.1
MFS transporter, AAHS family, benzoate transport protein.
     
 0.454
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.