STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP04187.1Murein L,D-transpeptidase YcbB/YkuD. (533 aa)    
Predicted Functional Partners:
SFP04204.1
L,D-transpeptidase catalytic domain.
 
   
 0.833
SFP04143.1
Hypothetical protein.
 
    0.659
SFP04165.1
SPFH domain, Band 7 family protein.
       0.573
SFP04124.1
Acetyltransferase (GNAT) family protein.
       0.538
SFP48710.1
L,D-transpeptidase ErfK/SrfK.
 
  
 0.479
SFQ06876.1
L,D-transpeptidase catalytic domain.
  
   
 0.405
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.