STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP11598.1Methyl-accepting chemotaxis sensory transducer with Cache sensor. (561 aa)    
Predicted Functional Partners:
SFQ30999.1
CheA signal transduction histidine kinase.
 
 0.994
SFP03548.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
 
 0.992
SFP03527.1
Chemosensory pili system protein ChpA (sensor histidine kinase/response regulator).
  
 0.977
SFO92017.1
Two-component system, chemotaxis family, response regulator CheV.
 
 0.972
SFP30234.1
Two-component system, chemotaxis family, response regulator CheV.
 
 0.965
SFO87042.1
Two-component system, chemotaxis family, sensor kinase CheA.
 
 0.957
SFO86919.1
CheW protein.
 
 0.941
SFP99502.1
CheW protein.
 
 0.927
SFO91677.1
CheW protein.
 
 0.917
SFP73537.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.915
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
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