STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP48157.1Cysteine desulfurase /L-selenocysteine selenide-lyase (L-alanine-forming); Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. (421 aa)    
Predicted Functional Partners:
SFP48130.1
Nitrogen fixation protein NifU.
 
 0.998
SFP48210.1
Iron-regulated ABC transporter ATPase subunit SufC.
 
  
 0.991
SFP48181.1
Iron-regulated ABC transporter permease protein SufD.
 
 
 0.989
SFP48236.1
Iron-regulated ABC transporter membrane component SufB.
 
 
 0.988
SFP42345.1
Cysteine desulfuration protein SufE.
 
 0.985
SFQ07515.1
FeS assembly scaffold apoprotein IscU; A scaffold on which IscS assembles Fe-S clusters. It is likely that Fe-S cluster coordination is flexible as the role of this complex is to build and then hand off Fe-S clusters.
  
 0.984
SFP48103.1
Probable FeS assembly SUF system protein SufT.
 
  
 0.956
SFP23631.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.921
SFP70261.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.921
gcvP
Glycine dehydrogenase (decarboxylating); The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family.
    
  0.716
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
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