STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP66419.1HD-like signal output (HDOD) domain, no enzymatic activity. (507 aa)    
Predicted Functional Partners:
SFQ16024.1
Hypothetical protein.
  
     0.774
SFQ16071.1
Hypothetical protein.
  
     0.774
SFQ16046.1
Bacterial condensin subunit MukE.
  
     0.772
SFQ00817.1
Transcriptional regulator, TetR family.
  
     0.766
SFP32376.1
Hypothetical protein.
  
     0.765
SFP66274.1
Uncharacterized membrane protein affecting hemolysin expression.
  
     0.762
SFP88127.1
Uncharacterized conserved protein, contains GH25 family domain.
  
     0.757
SFP07226.1
Protein of unknown function.
  
     0.725
SFP19415.1
Uncharacterised protein family (UPF0259).
  
     0.723
SFP32398.1
Iron complex outermembrane recepter protein.
  
     0.719
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.