STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP85264.1Amino acid ABC transporter substrate-binding protein, PAAT family; Belongs to the bacterial solute-binding protein 3 family. (342 aa)    
Predicted Functional Partners:
SFP85302.1
Amino acid ABC transporter membrane protein 2, PAAT family.
 
 0.997
SFP85279.1
Amino acid ABC transporter membrane protein 1, PAAT family.
 
 
 0.996
SFP85322.1
Amino acid ABC transporter ATP-binding protein, PAAT family.
 
 0.996
SFP69353.1
L-glutamate ABC transporter ATP-binding protein.
 
 0.878
SFP69327.1
L-glutamate ABC transporter membrane protein.
 
 0.833
SFP44067.1
Na+/proline symporter.
  
 0.728
SFP69295.1
L-glutamate ABC transporter membrane protein.
 
 0.713
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
    
 0.713
SFP41405.1
Signal transduction histidine kinase.
   
 0.707
SFP73537.1
Diguanylate cyclase (GGDEF) domain-containing protein.
   
 0.702
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
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