STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP99204.1Collagenase-like protease, PrtC family. (296 aa)    
Predicted Functional Partners:
SFP99192.1
Putative protease.
 
 
 0.977
SFO80432.1
Predicted lipid carrier protein YhbT, contains SCP2 domain.
 
  
 0.938
SFO80389.1
Putative protease.
 
 
 0.911
SFP05244.1
Putative protease.
 
 
 0.714
SFQ05542.1
Putative protease.
 
 
 0.697
SFP99099.1
Nitrous oxidase accessory protein.
 
    0.635
SFP99168.1
Copper chaperone NosL.
 
    0.621
SFP99127.1
Cu-processing system ATP-binding protein.
 
    0.619
SFP99048.1
NosR/NirI family transcriptional regulator, nitrous oxide reductase regulator.
 
    0.598
SFP91779.1
Predicted O-methyltransferase YrrM.
  
  
 0.577
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.