STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ25422.1Transcriptional regulator, AraC family with amidase-like domain. (338 aa)    
Predicted Functional Partners:
SFP44115.1
Transcriptional regulator, AraC family.
  
   0.673
SFP25181.1
DNA-3-methyladenine glycosylase II.
  
 
  0.644
rpoD
RNA polymerase, sigma 70 subunit, RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.621
SFP82124.1
Transcriptional regulator, AraC family.
  
   0.606
SFP55162.1
AraC-type DNA-binding protein.
  
   0.599
SFP30278.1
AraC-type DNA-binding protein.
  
     0.574
SFP00456.1
Transcriptional regulator, AraC family.
 
 
 0.560
SFQ01366.1
AraC-type DNA-binding protein.
  
   0.560
SFQ15439.1
Sarcosine oxidase subunit gamma.
 
    0.549
SFP93671.1
AraC family transcriptional regulator.
  
   0.547
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.