STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ25261.1Spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (362 aa)    
Predicted Functional Partners:
SFQ25226.1
Spermidine/putrescine transport system permease protein/putrescine transport system permease protein.
 
 0.968
SFQ25241.1
Spermidine/putrescine transport system permease protein.
 
 
 0.965
SFQ25206.1
Spermidine/putrescine transport system substrate-binding protein.
 
 
 0.939
SFQ00613.1
Putrescine transport system permease protein.
 
 0.921
SFP07371.1
Putative spermidine/putrescine transport system permease protein.
 
 0.872
SFQ00548.1
Putrescine transport system permease protein.
 
 
 0.865
SFP04011.1
Putative spermidine/putrescine transport system permease protein.
 
 0.858
SFP03986.1
Putative spermidine/putrescine transport system permease protein.
 
 0.851
SFQ18544.1
Putative spermidine/putrescine transport system permease protein.
 
 
 0.843
SFQ18530.1
Putative spermidine/putrescine transport system permease protein.
 0.837
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.