STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFQ30077.1Cytochrome P450. (418 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.999
SFP73322.1
1-acyl-sn-glycerol-3-phosphate acyltransferases.
  
 0.993
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.960
SFQ30062.1
Ferredoxin, 2Fe-2S.
 
 0.949
SFQ32690.1
P-cymene monooxygenase electron transfer component.
 
 0.904
SFQ13712.1
Hypothetical protein.
  
 0.895
SFO95975.1
Benzoate/toluate 1,2-dioxygenase reductase subunit.
  
 0.890
SFP38337.1
CDP-4-dehydro-6-deoxyglucose reductase.
  
 0.890
SFQ05470.1
NAD(P)H-flavin reductase.
  
 0.890
SFQ21570.1
2Fe-2S iron-sulfur cluster binding domain-containing protein.
  
 0.890
Your Current Organism:
Pseudomonas borbori
NCBI taxonomy Id: 289003
Other names: DSM 17834, LMG 23199, LMG:23199, P. borbori, Pseudomonas borbori Vanparys et al. 2006, Pseudomonas sp. R-20946, Pseudomonas sp. R-20955, Pseudomonas sp. R-23040, strain R-20821
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