STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A2X0LFK8BZ3500_MvSof-1268-A1-R1_Chr5-2g07925 protein. (1073 aa)    
Predicted Functional Partners:
A0A2X0M8M9
U1 small nuclear ribonucleoprotein C; Component of the spliceosomal U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA. Stimulates commitment or early (E) complex formation by stabilizing the base pairing of the 5' end of the U1 snRNA and the 5' splice-site region.
   
 0.969
A0A2X0LBQ5
BZ3500_MvSof-1268-A1-R1_Chr3-3g06417 protein.
   
 0.958
A0A2X0KET0
Nuclear cap-binding protein subunit 2.
    
 0.957
A0A2X0KB04
BZ3500_MvSof-1268-A1-R1_Chr2-2g05182 protein; Belongs to the eukaryotic initiation factor 4E family.
    
 0.955
A0A2X0L6W8
BZ3500_MvSof-1268-A1-R1_Chr7-3g09703 protein.
    
 0.955
A0A2X0LBG2
BZ3500_MvSof-1268-A1-R1_Chr7-1g09224 protein.
   
 0.951
A0A2X0LH29
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.951
A0A2X0KJ73
BZ3500_MvSof-1268-A1-R1_Chr2-1g04445 protein.
   
 0.949
A0A2X0KPN9
BZ3500_MvSof-1268-A1-R1_Chr8-1g09807 protein.
    
 0.947
A0A2X0LRR5
BZ3500_MvSof-1268-A1-R1_Chr8-1g09902 protein.
    
 0.947
Your Current Organism:
Microbotryum saponariae
NCBI taxonomy Id: 289078
Other names: M. saponariae
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.