STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI32689.1ATP-binding cassette, subfamily C, LapB; Manually curated. (718 aa)    
Predicted Functional Partners:
SFI32671.1
Membrane fusion protein, adhesin transport system.
 0.996
SFI95857.1
Membrane fusion protein, adhesin transport system.
 0.983
SFI88722.1
NADPH-dependent ferric siderophore reductase, contains FAD-binding and SIP domains.
   
  0.967
SFI32705.1
Outer membrane protein, adhesin transport system.
 
 
 0.964
SFI25145.1
ATP-binding cassette, subfamily C.
 
 
0.905
msbA
ATP-binding cassette, subfamily B, MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
0.905
SFI79790.1
ATP-binding cassette, subfamily B.
 
 
0.900
SFI28592.1
ATP-binding cassette, subfamily B, multidrug efflux pump.
   
0.896
SFI95885.1
Outer membrane protein, adhesin transport system.
 
 
 0.893
SFI21511.1
Membrane fusion protein, multidrug efflux system.
  
 0.841
Your Current Organism:
Pseudomonas argentinensis
NCBI taxonomy Id: 289370
Other names: CCUG 50743, CECT 7010, LMG 22563, LMG:22563, P. argentinensis, Pseudomonas argentinae, Pseudomonas argentinensis Peix et al. 2005, Pseudomonas sp. M7C2, strain CH01
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