STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI35827.1Hypothetical protein. (123 aa)    
Predicted Functional Partners:
SFI78483.1
Uncharacterized protein; Belongs to the UPF0149 family.
  
     0.773
SFJ15533.1
Protein of unknown function.
  
     0.761
SFI22038.1
Hypothetical protein.
  
     0.747
SFI92643.1
Hypothetical protein.
  
    0.746
SFI27464.1
Hypothetical protein.
  
     0.732
dapE
Succinyldiaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily.
       0.731
SFI35811.1
23S rRNA m(1)G-745 methyltransferase.
       0.731
SFJ07467.1
Putative sterol carrier protein.
  
     0.718
SFI39453.1
TIGR02099 family protein.
  
     0.709
SFI35103.1
Periplasmic chaperone for outer membrane proteins Skp.
  
     0.705
Your Current Organism:
Pseudomonas argentinensis
NCBI taxonomy Id: 289370
Other names: CCUG 50743, CECT 7010, LMG 22563, LMG:22563, P. argentinensis, Pseudomonas argentinae, Pseudomonas argentinensis Peix et al. 2005, Pseudomonas sp. M7C2, strain CH01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.