Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFI22817.1 | SFI40751.1 | SAMN05216602_0092 | SAMN05216602_1270 | Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.764 |
SFI22817.1 | SFJ10207.1 | SAMN05216602_0092 | SAMN05216602_3891 | Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. | Phytoene desaturase. | 0.836 |
SFI22817.1 | SFJ10227.1 | SAMN05216602_0092 | SAMN05216602_3892 | Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. | Phytoene synthase. | 0.748 |
SFI22817.1 | SFJ26086.1 | SAMN05216602_0092 | SAMN05216602_4508 | Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. | Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.764 |
SFI40751.1 | SFI22817.1 | SAMN05216602_1270 | SAMN05216602_0092 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. | 0.764 |
SFI40751.1 | SFJ10207.1 | SAMN05216602_1270 | SAMN05216602_3891 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Phytoene desaturase. | 0.656 |
SFI40751.1 | SFJ10227.1 | SAMN05216602_1270 | SAMN05216602_3892 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Phytoene synthase. | 0.836 |
SFI40751.1 | SFJ20991.1 | SAMN05216602_1270 | SAMN05216602_4307 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Isopentenyldiphosphate isomerase. | 0.677 |
SFI40751.1 | SFJ26086.1 | SAMN05216602_1270 | SAMN05216602_4508 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.674 |
SFI40751.1 | dxs | SAMN05216602_1270 | SAMN05216602_1271 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily. | 0.805 |
SFI40751.1 | fni | SAMN05216602_1270 | SAMN05216602_3888 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.656 |
SFI40751.1 | ispH | SAMN05216602_1270 | SAMN05216602_4496 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.687 |
SFI40751.1 | uppS | SAMN05216602_1270 | SAMN05216602_0911 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Undecaprenyl pyrophosphate synthetase; Catalyzes the sequential condensation of isopentenyl diphosphate (IPP) with (2E,6E)-farnesyl diphosphate (E,E-FPP) to yield (2Z,6Z,10Z,14Z,18Z,22Z,26Z,30Z,34E,38E)-undecaprenyl diphosphate (di- trans,octa-cis-UPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide. | 0.854 |
SFI40751.1 | xseB | SAMN05216602_1270 | SAMN05216602_1269 | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. | 0.918 |
SFJ10207.1 | SFI22817.1 | SAMN05216602_3891 | SAMN05216602_0092 | Phytoene desaturase. | Electron-transferring-flavoprotein dehydrogenase; Accepts electrons from ETF and reduces ubiquinone. | 0.836 |
SFJ10207.1 | SFI40751.1 | SAMN05216602_3891 | SAMN05216602_1270 | Phytoene desaturase. | Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.656 |
SFJ10207.1 | SFJ10227.1 | SAMN05216602_3891 | SAMN05216602_3892 | Phytoene desaturase. | Phytoene synthase. | 0.998 |
SFJ10207.1 | SFJ20991.1 | SAMN05216602_3891 | SAMN05216602_4307 | Phytoene desaturase. | Isopentenyldiphosphate isomerase. | 0.446 |
SFJ10207.1 | SFJ26086.1 | SAMN05216602_3891 | SAMN05216602_4508 | Phytoene desaturase. | Octaprenyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family. | 0.564 |
SFJ10207.1 | fni | SAMN05216602_3891 | SAMN05216602_3888 | Phytoene desaturase. | Isopentenyl-diphosphate delta-isomerase; Involved in the biosynthesis of isoprenoids. Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP). | 0.846 |
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