STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI41022.1Type 4 prepilin peptidase 1 Aspartic peptidase. MEROPS family A24A; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. (290 aa)    
Predicted Functional Partners:
SFI41011.1
Type IV pilus assembly protein PilC.
 
  
 0.979
SFI40998.1
Type IV pilus assembly protein PilB.
 
 
 0.975
SFI66147.1
Type II secretion system protein F (GspF).
 
  
 0.906
SFI40986.1
Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.
 
  
 0.897
SFI66127.1
General secretion pathway protein E.
 
 
 0.895
SFI44917.1
General secretion pathway protein E.
 
 
 0.888
SFI89288.1
Pilus retraction ATPase PilT.
 
   
 0.866
SFI27094.1
Competence protein ComEC.
 
  
 0.839
SFI94884.1
DNA protecting protein DprA.
  
  
 0.811
SFJ11473.1
Twitching motility protein PilU.
  
   
 0.811
Your Current Organism:
Pseudomonas argentinensis
NCBI taxonomy Id: 289370
Other names: CCUG 50743, CECT 7010, LMG 22563, LMG:22563, P. argentinensis, Pseudomonas argentinae, Pseudomonas argentinensis Peix et al. 2005, Pseudomonas sp. M7C2, strain CH01
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