STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI43073.1Fe-S cluster biosynthesis and repair protein YggX; Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes. (90 aa)    
Predicted Functional Partners:
SFI43054.1
A/G-specific DNA-adenine glycosylase; Adenine glycosylase active on G-A mispairs.
  
  
 0.817
SFI43034.1
AsmA protein.
       0.805
SFJ24948.1
Stringent starvation protein B.
  
     0.686
SFI43023.1
L-2-hydroxyglutarate oxidase LhgO.
     
 0.647
apaH
Bis(5'nucleosyl)-tetraphosphatase, ApaH; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
  
     0.630
secE
Protein translocase subunit secE/sec61 gamma; Essential subunit of the Sec protein translocation channel SecYEG. Clamps together the 2 halves of SecY. May contact the channel plug during translocation; Belongs to the SecE/SEC61-gamma family.
  
     0.590
SFI32473.1
Hypothetical protein; Belongs to the GcvT family.
  
   
 0.518
bamE
Beta-barrel assembly machine subunit BamE; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
    0.515
SFI39504.1
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
 
     0.500
rpmF
LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.
  
     0.482
Your Current Organism:
Pseudomonas argentinensis
NCBI taxonomy Id: 289370
Other names: CCUG 50743, CECT 7010, LMG 22563, LMG:22563, P. argentinensis, Pseudomonas argentinae, Pseudomonas argentinensis Peix et al. 2005, Pseudomonas sp. M7C2, strain CH01
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