SFI46462.1 protein (Pseudomonas argentinensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

SFI46462.1

Amino acid ABC transporter substrate-binding protein, PAAT family. (280 aa)

Predicted Functional Partners:

SFI69662.1

0.808

SFI70753.1

0.739

SFI93237.1

0.734

SFI93254.1

0.715

SFI42875.1

0.713

SFI74193.1

0.697

SFI46480.1

0.686

SFI22747.1

0.684

SFJ11414.1

0.674

SFI42893.1

0.662

Your Current Organism:

Pseudomonas argentinensis

NCBI taxonomy Id: 289370
Other names: CCUG 50743, CECT 7010, LMG 22563, LMG:22563, P. argentinensis, Pseudomonas argentinae, Pseudomonas argentinensis Peix et al. 2005, Pseudomonas sp. M7C2, strain CH01

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFI22747.1	SFI42875.1	SAMN05216602_0088	SAMN05216602_1410	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.572
SFI22747.1	SFI42893.1	SAMN05216602_0088	SAMN05216602_1411	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.504
SFI22747.1	SFI46462.1	SAMN05216602_0088	SAMN05216602_1663	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.684
SFI22747.1	SFI69662.1	SAMN05216602_0088	SAMN05216602_2392	Amino acid ABC transporter substrate-binding protein, PAAT family.	PAS domain S-box-containing protein.	0.808
SFI22747.1	SFI70753.1	SAMN05216602_0088	SAMN05216602_2450	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.690
SFI22747.1	SFI74193.1	SAMN05216602_0088	SAMN05216602_2623	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.580
SFI22747.1	SFI93237.1	SAMN05216602_0088	SAMN05216602_3304	Amino acid ABC transporter substrate-binding protein, PAAT family.	Polar amino acid transport system substrate-binding protein.	0.609
SFI22747.1	SFI93254.1	SAMN05216602_0088	SAMN05216602_3305	Amino acid ABC transporter substrate-binding protein, PAAT family.	Polar amino acid transport system substrate-binding protein.	0.607
SFI22747.1	SFJ11414.1	SAMN05216602_0088	SAMN05216602_3951	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.539
SFI42875.1	SFI22747.1	SAMN05216602_1410	SAMN05216602_0088	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.572
SFI42875.1	SFI42893.1	SAMN05216602_1410	SAMN05216602_1411	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.479
SFI42875.1	SFI46462.1	SAMN05216602_1410	SAMN05216602_1663	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.713
SFI42875.1	SFI69662.1	SAMN05216602_1410	SAMN05216602_2392	Amino acid ABC transporter substrate-binding protein, PAAT family.	PAS domain S-box-containing protein.	0.808
SFI42875.1	SFI70753.1	SAMN05216602_1410	SAMN05216602_2450	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.741
SFI42875.1	SFJ11414.1	SAMN05216602_1410	SAMN05216602_3951	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.773
SFI42893.1	SFI22747.1	SAMN05216602_1411	SAMN05216602_0088	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.504
SFI42893.1	SFI42875.1	SAMN05216602_1411	SAMN05216602_1410	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.479
SFI42893.1	SFI46462.1	SAMN05216602_1411	SAMN05216602_1663	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.662
SFI42893.1	SFI69662.1	SAMN05216602_1411	SAMN05216602_2392	Amino acid ABC transporter substrate-binding protein, PAAT family.	PAS domain S-box-containing protein.	0.808
SFI42893.1	SFI70753.1	SAMN05216602_1411	SAMN05216602_2450	Amino acid ABC transporter substrate-binding protein, PAAT family.	Amino acid ABC transporter substrate-binding protein, PAAT family.	0.730

page 1 of 4

Server load: low (8%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Fusion

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About