STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI46836.1Alpha-1,6-rhamnosyltransferase. (304 aa)    
Predicted Functional Partners:
SFI46862.1
Glycosyl transferases group 1.
  
 
 0.852
SFI22157.1
Non-ribosomal peptide synthase domain TIGR01720/amino acid adenylation domain-containing protein.
  
 0.815
SFI46846.1
Hypothetical protein.
       0.784
SFI71909.1
Putative colanic acid biosysnthesis UDP-glucose lipid carrier transferase.
 
  
 0.754
SFI22142.1
Amino acid adenylation domain-containing protein.
   
 0.642
SFI78119.1
methionyl-tRNA formyltransferase.
 
 0.637
SFI71712.1
Mannose-1-phosphate guanylyltransferase (GDP); Belongs to the mannose-6-phosphate isomerase type 2 family.
 
 
 0.623
SFI40892.1
Phosphatidylinositol alpha-1,6-mannosyltransferase.
 
 
 0.621
SFI78222.1
UDP-2-acetamido-2,6-beta-L-arabino-hexul-4-ose reductase.
  
 
 0.593
SFI71975.1
Capsular exopolysaccharide family.
 
  
 0.585
Your Current Organism:
Pseudomonas argentinensis
NCBI taxonomy Id: 289370
Other names: CCUG 50743, CECT 7010, LMG 22563, LMG:22563, P. argentinensis, Pseudomonas argentinae, Pseudomonas argentinensis Peix et al. 2005, Pseudomonas sp. M7C2, strain CH01
Server load: low (16%) [HD]