STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI64581.1FecR family protein. (326 aa)    
Predicted Functional Partners:
SFI64565.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.971
SFI64600.1
Iron complex outermembrane recepter protein.
 
 
 0.877
SFI26160.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.874
SFI42001.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.874
SFJ10084.1
RNA polymerase sigma-70 factor, ECF subfamily; Manually curated; Belongs to the sigma-70 factor family. ECF subfamily.
 
 0.874
SFI87522.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.872
SFI90729.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.872
SFI69796.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.870
SFJ20832.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
 0.869
SFI90775.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
 
 0.830
Your Current Organism:
Pseudomonas argentinensis
NCBI taxonomy Id: 289370
Other names: CCUG 50743, CECT 7010, LMG 22563, LMG:22563, P. argentinensis, Pseudomonas argentinae, Pseudomonas argentinensis Peix et al. 2005, Pseudomonas sp. M7C2, strain CH01
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