STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFI66262.1Type II secretion system protein M (GspM). (128 aa)    
Predicted Functional Partners:
SFI66183.1
General secretion pathway protein H.
       0.805
SFI66204.1
Type II secretion system protein I (GspI).
       0.805
SFI66224.1
Type II secretion system protein J (GspJ).
       0.805
SFI66240.1
General secretion pathway protein L.
       0.805
SFI66283.1
Type II secretion system protein N (GspN).
       0.805
SFI66168.1
Type II secretion system protein G (GspG).
       0.801
SFI66067.1
2',3'-cyclic-nucleotide 2'-phosphodiesterase/5'-or 3'-nucleotidase, 5'-nucleotidase family.
       0.774
SFI66109.1
General secretion pathway protein D.
       0.738
SFI66147.1
Type II secretion system protein F (GspF).
       0.738
SFI66091.1
General secretion pathway protein C.
       0.737
Your Current Organism:
Pseudomonas argentinensis
NCBI taxonomy Id: 289370
Other names: CCUG 50743, CECT 7010, LMG 22563, LMG:22563, P. argentinensis, Pseudomonas argentinae, Pseudomonas argentinensis Peix et al. 2005, Pseudomonas sp. M7C2, strain CH01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.