STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ28880.1Glycine betaine/proline transport system substrate-binding protein. (314 aa)    
Predicted Functional Partners:
SFJ28837.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.997
SFJ28855.1
Glycine betaine/proline transport system permease protein.
 
 0.989
SFJ28892.1
Glycine betaine/proline transport system substrate-binding protein.
 
 
0.910
SFJ28228.1
Glycine betaine/proline transport system substrate-binding protein.
  
  
 
0.683
betI
Transcriptional regulator, TetR family; Repressor involved in choline regulation of the bet genes.
 
     0.614
SFJ28131.1
Rieske 2Fe-2S family protein.
 
    0.512
SFJ28704.1
Hypothetical protein.
  
    0.494
SFJ27993.1
Sarcosine oxidase subunit delta.
 
    0.479
SFJ28112.1
Ferredoxin-NADP reductase.
  
  
 0.468
SFJ30060.1
Osmoprotectant transport system permease protein.
 
 
 0.466
Your Current Organism:
Pseudomonas argentinensis
NCBI taxonomy Id: 289370
Other names: CCUG 50743, CECT 7010, LMG 22563, LMG:22563, P. argentinensis, Pseudomonas argentinae, Pseudomonas argentinensis Peix et al. 2005, Pseudomonas sp. M7C2, strain CH01
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