STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI20190.1DNA polymerase III PolC-type, putative; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573. (225 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
  
 0.982
ACI21693.1
DNA polymerase III alpha subunit; Identified by match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594.
   
 0.982
ACI20985.1
DNA polymerase III, subunits gamma and tau.
   
 0.969
dnaX
DNA polymerase III subunit gamma/tau; DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
   
 0.969
ACI21029.1
DNA polymerase III, delta subunit superfamily; Identified by match to protein family HMM PF06144.
    
 0.943
ACI21296.1
DNA polymerase III alpha subunit; Identified by match to protein family HMM PF00929; match to protein family HMM TIGR00573.
 
  
 
0.932
ACI21509.1
Putative nucleotidyltransferase family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445.
 
    0.854
ACI20666.1
Sodium/solute symporter, putative; Identified by match to protein family HMM PF00474; match to protein family HMM TIGR00813; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
    0.845
ACI21540.1
Membrane protein.
 
     0.836
ACI20625.1
Putative nucleotidyltransferase family; Identified by match to protein family HMM PF00027; match to protein family HMM PF00571; match to protein family HMM PF03445.
 
    0.831
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.