STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI21257.1Hypothetical protein; Identified by glimmer; putative. (383 aa)    
Predicted Functional Partners:
cas6_1
CRISPR-associated protein Cas6; Identified by match to protein family HMM TIGR01877.
 
     0.944
csm3_1
CRISPR-associated RAMP protein, Csm3 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02582.
 
     0.892
csm1_1
CRISPR-associated protein, Csm1 family; Identified by match to protein family HMM TIGR02578.
 
     0.879
csm4
CRISPR-associated RAMP protein, Csm4 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01903.
 
     0.795
csm5_1
CRISPR-associated RAMP protein, Csm5 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899.
 
     0.795
csm2_1
CRISPR-associated protein, Csm2 family; Identified by match to protein family HMM TIGR01870.
 
     0.785
ACI20731.1
CRISPR-associated protein, NE0113 family; Identified by match to protein family HMM TIGR02584.
 
     0.783
ACI21877.1
CRISPR-associated protein, NE0113 family; Identified by match to protein family HMM TIGR02584.
 
     0.779
cas2_1
CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette.
 
     0.777
ACI21809.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.