STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACI21809.1Hypothetical protein; Identified by glimmer; putative. (82 aa)    
Predicted Functional Partners:
ACI21257.1
Hypothetical protein; Identified by glimmer; putative.
       0.773
cas6_1
CRISPR-associated protein Cas6; Identified by match to protein family HMM TIGR01877.
       0.773
csm4
CRISPR-associated RAMP protein, Csm4 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01903.
       0.675
csm5_1
CRISPR-associated RAMP protein, Csm5 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR01899.
       0.675
ACI20589.1
Hypothetical protein; Identified by glimmer; putative.
       0.675
csm1_1
CRISPR-associated protein, Csm1 family; Identified by match to protein family HMM TIGR02578.
       0.652
csm2_1
CRISPR-associated protein, Csm2 family; Identified by match to protein family HMM TIGR01870.
       0.652
csm3_1
CRISPR-associated RAMP protein, Csm3 family; Identified by match to protein family HMM PF03787; match to protein family HMM TIGR02582.
       0.652
ACI22041.1
DNA internalization-related competence protein ComEC/Rec2; Identified by match to protein family HMM PF00753; match to protein family HMM PF03772; match to protein family HMM TIGR00360; match to protein family HMM TIGR00361.
       0.608
hisH
Imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the synthesis of IGP and AICAR. The resulting ammonia molecule is channeled to the active site of HisF.
       0.599
Your Current Organism:
Thermodesulfovibrio yellowstonii
NCBI taxonomy Id: 289376
Other names: T. yellowstonii DSM 11347, Thermodesulfovibrio yellowstonii DSM 11347
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.